Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
22
total RNA-seq
ATAC-seq
4
DNase-seq
4
pCHi-C
2
Hi-C
Assay category
195
DNA binding
22
Transcription
4
DNA accessibility
2
3D chromatin structure
Target of assay
168
histone
168
histone modification
129
narrow histone mark
39
broad histone mark
27
control
Date released
537
February, 2021
282
August, 2017
226
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
38
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
20
November, 2019
19
April, 2020
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
3
December, 2019
2
November, 2020
1
August, 2022
1
March, 2019
Available data
184
bam
157
bigWig
149
bed narrowPeak
49
tagAlign
46
bigBed narrowPeak
8
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe
1
bedpe bed3+
1
tagAlign bed3+
Organism
227
Homo sapiens
Biosample type
227
tissue
32
primary cell
30
cell line
4
in vitro differentiated cells
Organ
85
brain
67
limb
41
nerve
25
artery
25
blood vessel
25
vasculature
20
eye
8
heart
6
liver
4
gonad
4
kidney
4
ovary
1
connective tissue
1
lymph node
1
pancreas
1
pituitary gland
Project
227
AMP
Genome assembly (visualization)
161
hg19
159
GRCh38
Lab
226
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
ATAC-seq
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
227 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
Hi-C
tissue
tibial nerve
35
4
2
islet of Langerhans
21
14
4
1
tibial artery
23
2
heart
5
2
1
brain
5
1
+ See 77 more…
See all biosamples
Download