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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
28
ChIP-seq
6
total RNA-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
28
DNA binding
8
Transcription
4
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
25
October, 2019
5
May, 2019
4
February, 2023
2
August, 2021
2
February, 2020
2
June, 2019
Available data
32
bam
25
bed narrowPeak
25
bigBed narrowPeak
25
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tsv
4
txt
Organism
40
Homo sapiens
Biosample type
58
cell line
40
tissue
2
primary cell
Organ
541
connective tissue
482
adipose tissue
443
pancreas
340
liver
274
heart
261
brain
224
kidney
146
bone element
114
limb
95
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
Lab
40
AMP-T2D consortium
assay_title!
ATAC-seq
organ_slims!
gonad
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
tissue
tibial artery
23
1
2
coronary artery
5
1
2
pulmonary artery
2
acetabular part of hip bone
1
ilium
1
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