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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
9
Transcription
3
3D chromatin structure
Date released
6
August, 2021
3
February, 2020
3
March, 2020
July, 2019
1
October, 2019
Available data
bam
bigWig
87
bed narrowPeak
83
bigBed narrowPeak
63
tsv
17
bed broadPeak
17
bigBed broadPeak
11
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bedpe bed3+
1
tar
Organism
13
Homo sapiens
Biosample type
11
tissue
2
primary cell
Organ
161
pancreas
131
kidney
120
epithelium
102
heart
89
bone element
73
liver
68
connective tissue
45
adipose tissue
35
brain
25
eye
20
lung
20
musculature of body
13
blood vessel
13
vasculature
8
blood
8
bodily fluid
5
gonad
5
ovary
4
artery
4
limb
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
13
AMP
Genome assembly (visualization)
3
hg19
Lab
13
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
ATAC-seq
files.file_type!
bam
bigWig
month_released!
July, 2019
BIOSAMPLE
ASSAY
13 results
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Clear Filters
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
coronary artery
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
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