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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
12
total RNA-seq
3
Hi-C
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
22
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
13
November, 2017
12
February, 2020
7
October, 2017
5
July, 2019
2
March, 2020
2
October, 2019
Available data
bam
220
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
20
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
41
Homo sapiens
Biosample type
37
tissue
4
primary cell
Organ
167
pancreas
147
heart
135
kidney
125
epithelium
90
liver
89
bone element
71
connective tissue
46
adipose tissue
41
brain
38
musculature of body
26
eye
20
lung
16
vasculature
15
blood vessel
8
blood
8
bodily fluid
8
limb
5
gonad
5
ovary
4
artery
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
small intestine
1
spinal cord
1
spleen
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
8
hg19
2
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bam
cool
organ_slims!
stomach
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
tissue
brain
7
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
+ See 14 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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