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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
6
single cell RNA-seq
5
Hi-C
3
pCHi-C
3
total RNA-seq
1
RRBS
Assay category
9
Transcription
5
3D chromatin structure
1
DNA methylation
Date released
6
August, 2021
4
March, 2020
3
February, 2020
3
July, 2019
1
May, 2021
1
October, 2019
Available data
bam
150
bigWig
87
bed narrowPeak
83
bigBed narrowPeak
69
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
4
fastq
4
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
18
Homo sapiens
Biosample type
13
tissue
5
primary cell
Organ
159
pancreas
147
heart
135
kidney
125
epithelium
89
bone element
83
liver
64
connective tissue
41
adipose tissue
40
brain
35
musculature of body
26
eye
20
lung
16
vasculature
15
blood vessel
8
blood
8
bodily fluid
8
limb
5
gonad
5
ovary
4
artery
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
17
AMP
1
T1D
Genome assembly (visualization)
6
hg19
Lab
17
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assay_title!
ATAC-seq
files.file_type!
bam
target.investigated_as!
control
BIOSAMPLE
ASSAY
18 results
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single cell RNA-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
tissue
aorta
4
1
1
pulmonary artery
2
thymus
2
ascending aorta
1
coronary artery
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
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