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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
224
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
ATAC-seq
3
DNase-seq
1
FAIRE-seq
Assay category
224
DNA binding
89
Transcription
15
DNA methylation
4
DNA accessibility
Target of assay
150
histone modification
149
histone
81
broad histone mark
67
narrow histone mark
48
control
26
transcription factor
4
RNA binding protein
2
chromatin remodeller
Date released
691
February, 2021
363
May, 2021
November, 2017
332
August, 2017
282
October, 2019
241
May, 2020
238
August, 2021
168
July, 2018
122
May, 2022
120
May, 2019
102
February, 2023
98
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
14
November, 2020
12
October, 2017
10
December, 2019
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
4
September, 2017
3
June, 2018
1
August, 2022
1
March, 2019
Available data
282
fastq
277
bam
267
bigWig
137
bed narrowPeak
89
tsv
85
tagAlign
bed broadPeak
37
bigBed narrowPeak
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
331
Homo sapiens
Biosample type
230
tissue
60
in vitro differentiated cells
42
primary cell
Organ
154
pancreas
111
connective tissue
51
adipose tissue
50
liver
26
epithelium
13
musculature of body
Project
332
AMP
Genome assembly (visualization)
197
hg19
192
GRCh38
Lab
332
AMP-T2D consortium
Audit category:
25
missing controlled_by
Audit category:
12
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
files.file_type!
bed bed3+
bed broadPeak
month_released!
November, 2017
BIOSAMPLE
ASSAY
332 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
17
89
1
1
liver
45
3
1
subcutaneous abdominal adipose tissue
35
3
skeletal muscle tissue
9
4
pancreas
8
+ See 3 more…
in vitro differentiated cells
adipocyte
60
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
skeletal muscle myoblast
2
1
1
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