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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
2
RRBS
2
small RNA-seq
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
33
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
control
Date released
41
June, 2019
21
August, 2017
8
July, 2019
6
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
Available data
67
bigWig
60
bed narrowPeak
54
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
9
tsv
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
85
Homo sapiens
Biosample type
74
tissue
11
primary cell
Organ
735
pancreas
657
liver
621
connective tissue
459
adipose tissue
385
epithelium
318
heart
263
kidney
249
brain
166
vasculature
162
blood vessel
147
bone element
96
limb
87
artery
85
musculature of body
62
blood
62
bodily fluid
31
eye
31
nerve
30
embryo
20
lung
20
vein
18
ureter
14
spleen
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
69
hg19
52
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
files.file_type!
bed bedMethyl
organ_slims!
small intestine
target.investigated_as!
control
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
1
2
1
1
1
muscle of leg
6
13
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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