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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
202
ChIP-seq
ATAC-seq
51
total RNA-seq
9
WGBS
6
RRBS
4
DNase-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
single cell RNA-seq
Assay category
202
DNA binding
52
Transcription
15
DNA methylation
4
DNA accessibility
Target of assay
133
histone modification
132
histone
77
broad histone mark
54
narrow histone mark
40
transcription factor
29
control
6
RNA binding protein
3
chromatin remodeller
Date released
661
February, 2021
406
November, 2017
320
May, 2021
277
October, 2019
241
May, 2020
239
August, 2021
221
August, 2017
214
June, 2019
118
May, 2019
96
July, 2019
94
December, 2017
81
November, 2018
80
April, 2019
76
May, 2022
57
February, 2023
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
15
October, 2017
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2021
5
January, 2018
5
March, 2023
5
November, 2020
4
May, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
156
fastq
112
bam
111
bigWig
91
bed narrowPeak
69
tagAlign
29
bed broadPeak
23
bigBed narrowPeak
15
bigBed broadPeak
14
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
4
tsv
4
txt
Organism
278
Homo sapiens
Biosample type
144
tissue
72
in vitro differentiated cells
57
primary cell
5
cell line
Organ
pancreas
128
connective tissue
66
epithelium
56
adipose tissue
53
liver
26
musculature of body
4
bone element
4
eye
4
skeleton
1
heart
Project
234
AMP
39
HPAP
5
T1D
Genome assembly (visualization)
115
hg19
95
GRCh38
Lab
234
AMP-T2D consortium
39
Klaus Kaestner, Upenn
5
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
files.file_type!
bed bedgraph
organ_slims!
pancreas
BIOSAMPLE
ASSAY
278 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
single cell RNA-seq
tissue
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
adipose tissue
2
3
+ See 8 more…
in vitro differentiated cells
adipocyte
67
1
1
immature adipocyte
2
preadipocyte
1
primary cell
exocrine cell
39
skeletal muscle myoblast
15
1
2
cell line
EndoC_BH1
3
2
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