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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
203
DNA binding
24
Transcription
3
3D chromatin structure
2
DNA methylation
1
DNA accessibility
Target of assay
175
histone
175
histone modification
109
narrow histone mark
66
broad histone mark
31
control
Date released
85
October, 2019
79
November, 2017
28
May, 2019
17
July, 2019
12
February, 2020
12
October, 2017
2
March, 2020
Available data
239
bam
218
bigWig
201
bed narrowPeak
125
bigBed narrowPeak
118
tagAlign
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
26
tsv
18
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
235
Homo sapiens
Biosample type
225
tissue
10
primary cell
Organ
735
pancreas
655
liver
649
connective tissue
482
adipose tissue
384
epithelium
316
heart
235
brain
201
kidney
173
vasculature
171
blood vessel
147
bone element
92
artery
78
limb
53
blood
53
bodily fluid
49
musculature of body
40
nerve
37
embryo
29
eye
20
lung
18
vein
15
spleen
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
235
AMP
Genome assembly (visualization)
169
GRCh38
126
hg19
Lab
235
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bed broadPeak
month_released!
November, 2018
November, 2019
BIOSAMPLE
ASSAY
235 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
17
1
1
temporal lobe
15
1
1
substantia nigra
15
1
angular gyrus
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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