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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
STARR-seq
4
ChIP-seq
3
Hi-C
ATAC-seq
1
whole genome sequencing assay
Assay category
10
Transcription
4
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
4
control
Date released
22
August, 2021
1
March, 2019
Available data
bed narrowPeak
11
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
23
Homo sapiens
Biosample type
20
cell line
3
tissue
Organ
17
liver
3
pancreas
2
kidney
Project
23
AMP
Genome assembly (visualization)
2
hg19
Lab
2052
AMP-T2D consortium
275
Klaus Kaestner, Upenn
175
Kyle Gaulton, UCSD
Katalin Susztak, Upenn
47
KPMP
23
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
bed narrowPeak
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
histone
BIOSAMPLE
ASSAY
23 results
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total RNA-seq
STARR-seq
ChIP-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
9
2
4
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
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