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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
13
total RNA-seq
ATAC-seq
2
pCHi-C
Assay category
28
DNA binding
13
Transcription
Target of assay
28
control
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
July, 2019
15
November, 2017
12
February, 2020
8
October, 2019
3
May, 2019
3
October, 2017
2
March, 2020
Available data
63
bam
39
bigWig
35
bed broadPeak
bed narrowPeak
35
bigBed broadPeak
35
bigBed narrowPeak
32
bed bed3+
19
tagAlign
15
tsv
10
fastq
Organism
43
Homo sapiens
Biosample type
40
tissue
3
primary cell
Organ
614
pancreas
531
connective tissue
434
adipose tissue
318
liver
288
epithelium
181
heart
150
kidney
147
bone element
88
vasculature
87
blood vessel
65
artery
43
brain
24
eye
24
limb
22
embryo
20
lung
19
musculature of body
16
nerve
14
blood
14
bodily fluid
11
spleen
4
skeleton
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
4
hg19
1
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
bed narrowPeak
month_released!
July, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
total RNA-seq
pCHi-C
tissue
brain
3
1
caudate nucleus
2
1
cerebellum (Hemisphere)
2
1
layer of hippocampus
3
substantia nigra
2
1
+ See 19 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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