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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
8
total RNA-seq
4
Hi-C
1
RRBS
1
WGBS
Assay category
18
DNA binding
8
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
21
October, 2019
7
July, 2019
3
February, 2020
1
May, 2019
Available data
107
bam
90
bigWig
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
8
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
32
Homo sapiens
Biosample type
31
tissue
1
primary cell
Organ
644
pancreas
592
connective tissue
476
adipose tissue
350
liver
306
epithelium
202
heart
160
kidney
147
bone element
103
vasculature
101
blood vessel
79
brain
67
artery
35
musculature of body
30
limb
27
eye
23
embryo
20
lung
16
nerve
14
blood
14
bodily fluid
11
spleen
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
32
AMP-T2D consortium
assay_title!
ATAC-seq
files.file_type!
bed narrowPeak
organ_slims!
vein
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
WGBS
tissue
tibial nerve
11
5
tibial artery
5
1
gastrocnemius medialis
1
4
muscle of leg
1
1
islet of Langerhans
1
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primary cell
pericardium fibroblast
1
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