Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
93
total RNA-seq
34
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
single cell RNA-seq
Assay category
94
Transcription
34
DNA binding
2
DNA accessibility
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
693
February, 2021
406
August, 2017
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
Available data
111
fastq
34
bam
30
bed narrowPeak
30
bigBed narrowPeak
30
bigWig
4
tsv
4
txt
Organism
136
Homo sapiens
Biosample type
76
primary cell
34
cell line
23
tissue
4
in vitro differentiated cells
Organ
45
pancreas
40
epithelium
27
blood
27
bodily fluid
7
spleen
4
bone element
4
connective tissue
4
eye
4
skeleton
1
heart
1
liver
Project
76
HPAP
49
AMP
12
T1D
Genome assembly (visualization)
30
GRCh38
30
hg19
Lab
76
Klaus Kaestner, Upenn
49
AMP-T2D consortium
12
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent control
assay_title!
ATAC-seq
files.file_type!
bedpe
month_released!
November, 2017
BIOSAMPLE
ASSAY
137 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
single cell RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
cell line
GM12878
27
EndoC_BH1
3
2
1
HepG2
1
tissue
islet of Langerhans
5
2
spleen
7
pigmented layer of retina
2
retina
2
acetabular part of hip bone
1
+ See 4 more…
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
See all biosamples
Download