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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
ATAC-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
2
DNase-seq
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
2
March, 2020
1
August, 2021
1
June, 2019
1
May, 2021
1
May, 2023
1
November, 2018
Available data
439
bam
421
bigWig
402
tsv
42
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
bedpe bed3+
Organism
485
Homo sapiens
Biosample type
484
tissue
2
primary cell
Organ
787
pancreas
764
liver
658
connective tissue
484
adipose tissue
416
epithelium
343
heart
282
brain
279
kidney
188
vasculature
182
blood vessel
147
bone element
114
limb
96
artery
93
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
21
spleen
21
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
485
AMP
1
T1D
Genome assembly (visualization)
421
GRCh38
420
hg19
Lab
485
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bedpe bed3+
target.investigated_as!
other context
BIOSAMPLE
ASSAY
486 results
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total RNA-seq
ChIP-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
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