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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
ATAC-seq
19
ChIP-seq
8
snATAC-seq
2
single cell RNA-seq
Assay category
58
Transcription
19
DNA binding
8
DNA accessibility
Target of assay
15
control
4
transcription factor
Date released
58
February, 2021
8
January, 2021
5
October, 2019
3
January, 2019
3
November, 2018
2
August, 2021
2
February, 2020
2
July, 2019
2
May, 2019
Available data
152
bam
137
bigWig
83
bed narrowPeak
bigBed narrowPeak
60
fastq
58
tsv
6
tagAlign
4
bed bed3+
4
bed broadPeak
bigBed broadPeak
Organism
85
Homo sapiens
Biosample type
64
cell line
11
tissue
10
primary cell
Organ
725
pancreas
635
connective tissue
477
adipose tissue
405
liver
365
epithelium
252
heart
175
kidney
155
brain
147
bone element
105
vasculature
103
blood vessel
71
artery
48
musculature of body
37
embryo
30
limb
27
eye
20
lung
16
nerve
14
blood
14
bodily fluid
11
spleen
7
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
8
T1D
Genome assembly (visualization)
58
GRCh38
58
hg19
Lab
77
AMP-T2D consortium
8
Kyle Gaulton, UCSD
assay_title!
ATAC-seq
files.file_type!
bigBed broadPeak
bigBed narrowPeak
BIOSAMPLE
ASSAY
85 results
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total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
GM12878
6
tissue
tibial artery
1
5
coronary artery
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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