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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
ATAC-seq
11
ChIP-seq
2
single cell RNA-seq
Assay category
57
Transcription
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
58
February, 2021
5
May, 2019
2
August, 2021
2
July, 2019
1
February, 2020
Available data
67
bam
63
bigWig
57
tsv
9
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
bigBed broadPeak
Organism
68
Homo sapiens
Biosample type
58
cell line
8
tissue
2
primary cell
Organ
787
pancreas
704
liver
650
connective tissue
483
adipose tissue
399
epithelium
316
heart
244
brain
201
kidney
173
vasculature
171
blood vessel
147
bone element
92
artery
limb
68
blood
68
bodily fluid
62
musculature of body
40
nerve
37
embryo
29
eye
20
lung
20
spleen
18
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
61
GRCh38
61
hg19
Lab
68
AMP-T2D consortium
assay_title!
ATAC-seq
files.file_type!
bigBed broadPeak
organ_slims!
limb
target.investigated_as!
other context
BIOSAMPLE
ASSAY
68 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
tissue
coronary artery
1
5
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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