Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
23
ChIP-seq
22
snATAC-seq
Assay category
60
Transcription
41
DNA methylation
23
DNA binding
22
DNA accessibility
Target of assay
23
control
Date released
693
February, 2021
369
August, 2017
365
May, 2021
243
August, 2021
241
May, 2020
217
October, 2019
168
July, 2018
123
May, 2022
102
February, 2023
100
July, 2019
94
November, 2017
59
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
44
December, 2017
40
May, 2024
39
February, 2018
35
November, 2019
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
16
April, 2019
16
January, 2021
15
November, 2018
14
November, 2020
10
December, 2019
9
January, 2019
9
October, 2017
8
June, 2019
6
September, 2017
5
December, 2018
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
126
bam
97
bed narrowPeak
bigBed narrowPeak
97
bigWig
95
zippedFastqFolder
7
txt
6
fastq
1
bed bed3+
Organism
146
Homo sapiens
Biosample type
96
primary cell
50
tissue
Organ
48
pancreas
42
epithelium
20
liver
11
blood vessel
11
vasculature
6
heart
3
brain
3
musculature of body
2
artery
1
kidney
1
limb
Project
95
HPAP
51
AMP
Genome assembly (visualization)
1
hg19
Lab
95
Klaus Kaestner, Upenn
25
AMP-T2D consortium
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
bigBed narrowPeak
organ_slims!
vein
BIOSAMPLE
ASSAY
146 results
search-icon
table-tab-icon
Clear Filters
WGBS
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
pancreatic beta cell
16
kidney epithelial cell
1
tissue
liver
20
islet of Langerhans
6
thoracic aorta
4
ascending aorta
3
right atrium auricular region
3
+ See 9 more…
See all biosamples
Download