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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
85
ChIP-seq
ATAC-seq
7
WGBS
4
Hi-C
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
408
Transcription
85
DNA binding
7
DNA methylation
4
3D chromatin structure
Target of assay
41
control
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
12
transcription factor
Date released
386
February, 2021
55
August, 2017
21
October, 2019
18
October, 2018
17
July, 2019
5
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2019
1
May, 2023
Available data
545
bam
510
bigWig
408
tsv
93
bed narrowPeak
bigBed narrowPeak
42
bed bed3+
42
fastq
39
bed broadPeak
38
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
506
Homo sapiens
Biosample type
504
tissue
2
primary cell
1
in vitro differentiated cells
Organ
725
pancreas
635
connective tissue
477
adipose tissue
411
liver
367
epithelium
252
heart
175
kidney
155
brain
147
bone element
107
vasculature
105
blood vessel
71
artery
48
musculature of body
37
embryo
30
limb
27
eye
20
lung
16
nerve
14
blood
14
bodily fluid
11
spleen
9
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
507
AMP
Genome assembly (visualization)
418
GRCh38
416
hg19
Lab
507
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bigBed narrowPeak
target.investigated_as!
other context
BIOSAMPLE
ASSAY
507 results
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total RNA-seq
ChIP-seq
WGBS
Hi-C
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
tibial nerve
5
11
omental fat pad
5
8
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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