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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
23
DNA binding
9
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
11
May, 2019
11
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
February, 2021
1
July, 2019
Available data
169
bam
bigWig
83
bed narrowPeak
79
bigBed narrowPeak
68
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
tar
Organism
37
Homo sapiens
Biosample type
28
tissue
7
primary cell
2
cell line
Organ
212
pancreas
167
liver
154
epithelium
148
kidney
126
heart
98
connective tissue
89
bone element
64
adipose tissue
62
brain
38
vasculature
37
blood vessel
28
musculature of body
27
eye
25
limb
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
skin of body
Project
37
AMP
Genome assembly (visualization)
3
hg19
Lab
37
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
ATAC-seq
files.file_type!
bigWig
tar
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
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primary cell
endothelial cell of umbilical vein
5
2
cell line
smooth muscle cell of the coronary artery
2
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