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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
ATAC-seq
56
ChIP-seq
1
pCHi-C
Assay category
190
Transcription
56
DNA binding
Target of assay
32
histone
32
histone modification
28
narrow histone mark
24
control
4
broad histone mark
Date released
648
February, 2021
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
124
August, 2017
120
May, 2019
118
July, 2018
102
July, 2019
82
November, 2017
80
April, 2019
60
March, 2020
47
September, 2023
40
May, 2024
35
November, 2019
26
February, 2023
25
February, 2020
22
May, 2022
19
April, 2020
16
January, 2021
16
October, 2018
15
November, 2020
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
May, 2023
1
August, 2022
1
March, 2019
1
October, 2022
Available data
246
bam
221
bigWig
189
tsv
64
tagAlign
33
bed narrowPeak
fastq
6
bigBed narrowPeak
3
bed broadPeak
Organism
247
Homo sapiens
Biosample type
199
tissue
47
primary cell
1
cell line
Organ
194
liver
6
brain
Project
202
AMP
45
T1D
Genome assembly (visualization)
215
hg19
207
GRCh38
Lab
202
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
fastq
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
247 results
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Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
brain
6
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
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cell line
HepG2
1
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