Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
102
ChIP-seq
37
DNase-seq
ATAC-seq
4
Hi-C
4
WGBS
3
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
408
Transcription
102
DNA binding
37
DNA accessibility
4
3D chromatin structure
4
DNA methylation
Target of assay
80
histone
80
histone modification
54
broad histone mark
26
narrow histone mark
22
control
Date released
386
February, 2021
67
October, 2019
39
August, 2017
33
June, 2019
17
July, 2019
7
May, 2019
5
February, 2020
1
August, 2021
1
March, 2020
1
May, 2023
Available data
545
bam
510
bigWig
408
tsv
93
bed narrowPeak
92
bigBed narrowPeak
42
bed bed3+
fastq
39
bed broadPeak
38
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
556
Homo sapiens
Biosample type
555
tissue
2
primary cell
Organ
560
connective tissue
443
adipose tissue
379
pancreas
346
heart
304
liver
279
kidney
262
brain
196
epithelium
184
vasculature
181
blood vessel
147
bone element
114
limb
96
artery
93
musculature of body
42
nerve
33
eye
22
vein
20
lung
18
ureter
10
embryo
8
blood
8
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
557
AMP
Genome assembly (visualization)
489
hg19
488
GRCh38
Lab
557
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
fastq
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
557 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
Hi-C
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
tibial nerve
5
35
2
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
2
muscle of leg
7
13
1
+ See 8 more…
primary cell
mesenchymal stem cell of adipose
1
1
See all biosamples
Download