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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
185
total RNA-seq
ATAC-seq
6
DNase-seq
4
WGBS
3
pCHi-C
2
STARR-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
186
Transcription
6
DNA accessibility
5
DNA methylation
1
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
53
November, 2018
34
August, 2021
20
May, 2022
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
1
February, 2020
Available data
671
bam
593
bigWig
464
fastq
418
bed narrowPeak
357
bigBed narrowPeak
167
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
hic
1
csv
1
vcf
Organism
756
Homo sapiens
Biosample type
399
cell line
331
tissue
15
in vitro differentiated cells
11
primary cell
Organ
781
pancreas
756
liver
641
connective tissue
473
adipose tissue
402
epithelium
322
heart
267
kidney
265
brain
177
vasculature
172
blood vessel
147
bone element
109
limb
94
artery
83
musculature of body
blood
68
bodily fluid
42
nerve
37
embryo
32
eye
24
spleen
20
lung
20
vein
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
756
AMP
Genome assembly (visualization)
591
hg19
521
GRCh38
Lab
706
AMP-T2D consortium
30
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
files.file_type!
hic
month_released!
July, 2019
organ_slims!
blood
BIOSAMPLE
ASSAY
756 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
pCHi-C
STARR-seq
Hi-C
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
1
1
tissue
liver
145
165
2
3
1
1
1
right lobe of liver
10
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
hepatic stellate cell
1
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