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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
ATAC-seq
74
total RNA-seq
42
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
42
DNA binding
6
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
RNA binding protein
Date released
693
February, 2021
398
August, 2017
369
November, 2017
360
May, 2021
288
October, 2019
241
May, 2020
240
August, 2021
214
June, 2019
168
July, 2018
123
May, 2022
115
May, 2019
102
February, 2023
102
July, 2019
90
December, 2017
76
April, 2019
67
November, 2018
65
October, 2018
59
September, 2018
56
September, 2020
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
32
November, 2019
25
February, 2020
24
January, 2019
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
4
August, 2018
4
March, 2023
4
May, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
123
tsv
57
txt
44
bigWig
39
bam
29
bed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
hic
1
vcf
Organism
239
Homo sapiens
Biosample type
164
tissue
42
cell line
30
in vitro differentiated cells
4
primary cell
Organ
92
heart
65
kidney
33
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
4
pancreas
3
connective tissue
2
artery
1
adipose tissue
Project
240
AMP
Genome assembly (visualization)
45
hg19
31
GRCh38
Lab
141
AMP-T2D consortium
63
Katalin Susztak, Upenn
34
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
hic
month_released!
March, 2020
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
240 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
17
2
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
21
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
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