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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
3
pCHi-C
2
WGBS
ATAC-seq
1
DNase-seq
Assay category
20
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
9
November, 2018
7
December, 2018
7
January, 2019
2
March, 2020
1
May, 2021
Available data
23
bam
23
fastq
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
26
Homo sapiens
Biosample type
26
tissue
Organ
pancreas
766
liver
659
connective tissue
485
adipose tissue
415
epithelium
343
heart
282
brain
278
kidney
187
vasculature
181
blood vessel
147
bone element
114
limb
96
artery
93
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
20
lung
20
vein
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
25
AMP
1
T1D
Genome assembly (visualization)
15
GRCh38
13
hg19
Lab
25
AMP-T2D consortium
1
Kyle Gaulton, UCSD
assay_title!
ATAC-seq
files.file_type!
hic
organ_slims!
pancreas
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
pCHi-C
WGBS
DNase-seq
tissue
spleen
20
1
2
1
thymus
2
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