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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
19
total RNA-seq
5
ChIP-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
19
Transcription
5
DNA binding
4
DNA accessibility
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
20
October, 2019
7
June, 2019
4
February, 2023
1
February, 2020
1
July, 2019
Available data
7
bam
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
33
Homo sapiens
Biosample type
28
tissue
5
primary cell
Organ
771
pancreas
651
liver
634
connective tissue
476
adipose tissue
412
epithelium
248
heart
213
kidney
178
vasculature
172
blood vessel
164
brain
147
bone element
114
limb
88
artery
80
musculature of body
68
blood
68
bodily fluid
42
nerve
33
eye
29
embryo
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
33
AMP-T2D consortium
assay_title!
ATAC-seq
files.file_type!
tagAlign
lab.title!
Stephen Parker, UMich
month_released!
August, 2021
BIOSAMPLE
ASSAY
33 results
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total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
RRBS
tissue
islet of Langerhans
14
2
4
retina
3
3
pigmented layer of retina
2
primary cell
retinal pigment epithelial cell
3
1
1
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