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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
134
DNA binding
30
DNA accessibility
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
35
June, 2019
21
May, 2019
10
July, 2019
6
February, 2021
6
October, 2019
2
March, 2020
1
February, 2023
Available data
220
bigWig
199
bam
tsv
144
bed narrowPeak
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
178
Homo sapiens
Biosample type
163
tissue
9
primary cell
6
cell line
Organ
594
liver
379
pancreas
266
epithelium
256
brain
188
kidney
181
connective tissue
178
heart
122
vasculature
116
blood vessel
107
limb
89
bone element
86
musculature of body
84
adipose tissue
68
blood
68
bodily fluid
38
artery
37
nerve
28
eye
23
embryo
23
spleen
22
vein
19
lung
18
ureter
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
thymus
Project
178
AMP
Genome assembly (visualization)
149
GRCh38
106
hg19
Lab
138
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
tsv
lab.title!
Katalin Susztak, Upenn
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
178 results
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ChIP-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
3
4
1
1
left cardiac atrium
40
1
heart
14
18
1
1
1
heart right ventricle
13
1
2
1
right atrium auricular region
10
2
+ See 2 more…
primary cell
cardiac fibroblast
5
3
1
cell line
smooth muscle cell of the coronary artery
6
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