Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
107
single cell RNA-seq
ATAC-seq
74
total RNA-seq
9
DNase-seq
7
WGBS
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
FAIRE-seq
1
RNA microarray
Assay category
181
Transcription
113
DNA binding
16
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
75
transcription factor
22
RNA binding protein
20
histone
20
histone modification
18
control
16
recombinant protein
11
narrow histone mark
9
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
242
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
126
bam
125
bigWig
123
tsv
103
bed narrowPeak
88
fastq
73
bigBed narrowPeak
57
txt
24
tagAlign
14
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
vcf
Organism
329
Homo sapiens
Biosample type
191
tissue
104
cell line
30
in vitro differentiated cells
5
primary cell
Organ
92
heart
87
liver
66
kidney
15
blood
15
bodily fluid
11
pancreas
9
spleen
8
embryo
6
blood vessel
6
epithelium
6
vasculature
4
connective tissue
2
adipose tissue
2
artery
2
brain
Project
330
AMP
Genome assembly (visualization)
119
hg19
110
GRCh38
Lab
229
AMP-T2D consortium
64
Katalin Susztak, Upenn
35
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
ATAC-seq
files.file_type!
vcf
BIOSAMPLE
ASSAY
330 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
WGBS
snATAC-seq
STARR-seq
Capture-C
Hi-C
FAIRE-seq
RNA microarray
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 18 more…
cell line
HepG2
63
9
1
2
1
GM12878
15
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
21
7
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
pancreatic cell
1
See all biosamples
Download