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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
37
ChIP-seq
ATAC-seq
3
small RNA-seq
2
WGBS
Assay category
398
Transcription
37
DNA binding
2
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
23
October, 2018
16
August, 2017
12
July, 2019
Available data
439
bam
421
bigWig
401
tsv
42
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
bigBed broadPeak
1
bedpe bed3+
Organism
437
Homo sapiens
Biosample type
435
tissue
2
primary cell
Organ
617
pancreas
614
liver
579
connective tissue
437
adipose tissue
271
epithelium
203
brain
169
heart
157
vasculature
156
blood vessel
88
artery
70
limb
66
kidney
60
blood
60
bodily fluid
58
bone element
39
nerve
36
embryo
24
musculature of body
19
spleen
16
vein
3
eye
1
pericardium
1
pituitary gland
Project
437
AMP
Genome assembly (visualization)
418
GRCh38
416
hg19
Lab
437
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bigBed broadPeak
target.investigated_as!
other context
BIOSAMPLE
ASSAY
437 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
2
2
subcutaneous adipose tissue
6
12
1
omental fat pad
4
11
1
white adipose tissue
12
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
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