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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
458
ChIP-seq
159
total RNA-seq
ATAC-seq
5
DNase-seq
3
small RNA-seq
1
Hi-C
1
WGBS
Assay category
458
DNA binding
162
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
337
transcription factor
82
recombinant protein
76
control
58
RNA binding protein
42
histone modification
41
histone
23
broad histone mark
23
chromatin remodeller
18
narrow histone mark
2
other context
2
other post-translational modification
Date released
302
November, 2017
143
May, 2020
63
December, 2017
53
November, 2018
25
August, 2017
14
August, 2021
8
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
1
March, 2020
Available data
678
bam
601
bigWig
464
fastq
418
bed narrowPeak
357
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
627
Homo sapiens
Biosample type
367
cell line
237
tissue
15
in vitro differentiated cells
8
primary cell
Organ
627
liver
615
pancreas
589
connective tissue
439
adipose tissue
288
epithelium
234
heart
170
vasculature
165
blood vessel
144
brain
144
kidney
106
limb
86
artery
60
blood
60
bodily fluid
58
bone element
57
musculature of body
41
nerve
37
embryo
23
spleen
20
vein
18
ureter
7
eye
1
pericardium
Project
627
AMP
Genome assembly (visualization)
555
hg19
497
GRCh38
Lab
613
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
627 results
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ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
Hi-C
WGBS
cell line
HepG2
361
5
1
tissue
liver
72
147
2
1
right lobe of liver
10
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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