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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
78
ChIP-seq
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
89
Transcription
78
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
97
histone modification
histone
50
narrow histone mark
47
transcription factor
45
broad histone mark
30
control
8
RNA binding protein
3
chromatin remodeller
Date released
554
February, 2021
317
November, 2017
211
May, 2020
199
June, 2019
178
May, 2021
174
August, 2017
164
July, 2018
87
November, 2018
76
July, 2019
71
October, 2019
63
December, 2017
49
April, 2018
46
October, 2018
34
December, 2018
28
May, 2019
26
September, 2018
23
August, 2021
23
February, 2018
23
January, 2019
23
November, 2019
20
April, 2019
13
March, 2020
6
May, 2022
6
September, 2017
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
2
October, 2017
Available data
179
fastq
174
bam
145
bigWig
89
tsv
30
bed narrowPeak
21
bed bed3+
10
tagAlign
7
bigBed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
bed broadPeak
4
bigBed broadPeak
Organism
174
Homo sapiens
Biosample type
128
tissue
29
in vitro differentiated cells
17
primary cell
Organ
112
pancreas
44
connective tissue
15
adipose tissue
13
liver
12
epithelium
Project
174
AMP
Genome assembly (visualization)
145
hg19
142
GRCh38
Lab
174
AMP-T2D consortium
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
ATAC-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
174 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
89
8
1
1
liver
13
white adipose tissue
12
adipose tissue
1
2
pancreas
1
in vitro differentiated cells
adipocyte
28
1
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
3
2
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