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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1578ChIP-seq
  • 1282total RNA-seq
  • 209DNase-seq
  • ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1578DNA binding
  • 1406Transcription
  • 214DNA accessibility
  • 18DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 554February, 2021
  • 392November, 2017
  • 277August, 2017
  • 264May, 2021
  • 244October, 2019
  • 238May, 2020
  • 218June, 2019
  • 164July, 2018
  • 120May, 2019
  • 94December, 2017
  • 87November, 2018
  • 79April, 2019
  • 76July, 2019
  • 76October, 2018
  • 58September, 2018
  • 49April, 2018
  • 39August, 2021
  • 39February, 2018
  • 34December, 2018
  • 33November, 2019
  • 30January, 2019
  • 16March, 2020
  • 8October, 2017
  • 6May, 2022
  • 6September, 2017
  • 5December, 2019
  • 5November, 2020
  • 3August, 2018
  • 3June, 2018
Available data
  • 3217bam
  • 3033bigWig
  • 1586tsv
  • 1539bed narrowPeak
  • 1297fastq
  • 1015bigBed narrowPeak
  • 398tagAlign
  • 320bed broadPeak
  • 285bigBed broadPeak
  • 269bed bed3+
  • 158txt
  • 114zippedFastqFolder
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 8csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3210Homo sapiens
Biosample type
  • 1843tissue
  • 572cell line
  • 525primary cell
  • 274in vitro differentiated cells
  • 3stem cell
Organ
  • 678liver
  • 624pancreas
  • 588connective tissue
  • 439adipose tissue
  • 293epithelium
  • 241brain
  • 199heart
  • 174vasculature
  • 169blood vessel
  • 144kidney
  • 106limb
  • 92artery
  • 60blood
  • 60bodily fluid
  • 58bone element
  • 57musculature of body
  • 41nerve
  • 36embryo
  • 23spleen
  • 20vein
  • 18ureter
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 3031AMP
  • 186T1D
Genome assembly (visualization)
  • 2848GRCh38
  • 2826hg19
Lab
  • 3031AMP-T2D consortium
  • 186Kyle Gaulton, UCSD
Audit category:
  • 197inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

3217 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans30266161
liver12214721
bone tissue58
body of pancreas352422
cell line
HepG235951
GM1287860
smooth muscle cell of the coronary artery652
EndoC_BH11533
Panc1131
primary cell
monocyte8453
pancreatic alpha cell131012
pancreatic beta cell131012
pancreatic ductal cell13410
pancreatic acinar cell8412
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell207
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)19
stem cell
hESC3
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