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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
31
ChIP-seq
5
Hi-C
ATAC-seq
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
205
DNA accessibility
31
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
19
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
control
2
RNA binding protein
Date released
187
June, 2019
31
August, 2017
December, 2017
9
November, 2018
8
October, 2019
August, 2021
4
July, 2019
2
February, 2021
2
May, 2021
1
May, 2022
1
November, 2020
Available data
2893
bigWig
2807
bam
1460
tsv
1437
bed narrowPeak
1056
fastq
965
bigBed narrowPeak
320
bed broadPeak
314
tagAlign
285
bigBed broadPeak
245
bed bed3+
114
zippedFastqFolder
101
txt
36
bed bedMethyl
36
bigBed bedMethyl
21
bedpe bed3+
21
hic
8
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
245
Homo sapiens
Biosample type
202
tissue
34
primary cell
6
in vitro differentiated cells
3
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
27
pancreas
20
connective tissue
18
epithelium
18
ureter
13
vasculature
11
blood vessel
9
liver
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
245
AMP
Genome assembly (visualization)
236
GRCh38
222
hg19
Lab
243
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
month_released!
August, 2021
December, 2017
target.investigated_as!
control
BIOSAMPLE
ASSAY
245 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans
19
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 42 more…
primary cell
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
+ See 19 more…
in vitro differentiated cells
adipocyte
6
cell line
Panc1
1
1
HepG2
1
See all biosamples
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