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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
DNase-seq
2
Hi-C
Assay category
7
DNA accessibility
2
3D chromatin structure
Date released
7
June, 2019
October, 2019
2
July, 2019
Available data
129
bam
117
bigWig
68
tsv
54
bed narrowPeak
50
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
6
fastq
6
tagAlign
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
2
hic
Organism
9
Homo sapiens
Biosample type
6
primary cell
3
tissue
Organ
78
kidney
35
brain
34
musculature of body
32
limb
30
heart
27
pancreas
23
connective tissue
19
epithelium
18
ureter
13
liver
9
vasculature
7
blood vessel
6
adipose tissue
4
eye
3
embryo
2
artery
1
spleen
Project
9
AMP
Genome assembly (visualization)
8
hg19
7
GRCh38
Lab
9
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
month_released!
October, 2019
September, 2020
BIOSAMPLE
ASSAY
9 results
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DNase-seq
Hi-C
primary cell
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
tissue
coronary artery
2
ascending aorta
1
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