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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1325ChIP-seq
  • ATAC-seq
  • 209DNase-seq
  • 5FAIRE-seq
Assay category
  • 1325DNA binding
  • 214DNA accessibility
Target of assay
  • 851histone modification
  • 850histone
  • 469transcription factor
  • 429narrow histone mark
  • 420broad histone mark
  • 105RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 313November, 2017
  • 210June, 2019
  • 183October, 2019
  • 137August, 2017
  • 120May, 2021
  • 97May, 2019
  • 73November, 2018
  • 72December, 2017
  • 65April, 2019
  • 45October, 2018
  • 40May, 2024
  • 32September, 2018
  • 30August, 2021
  • 30December, 2018
  • 27May, 2020
  • 21January, 2019
  • 16February, 2018
  • 11November, 2019
  • 6October, 2017
  • 5February, 2021
  • 3March, 2020
  • 2July, 2019
  • 1November, 2020
Available data
  • 3217bam
  • 3033bigWig
  • 1586tsv
  • 1539bed narrowPeak
  • 1297fastq
  • 1015bigBed narrowPeak
  • 398tagAlign
  • 320bed broadPeak
  • 285bigBed broadPeak
  • 269bed bed3+
  • 158txt
  • 114zippedFastqFolder
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 8csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1533Homo sapiens
Biosample type
  • 776tissue
  • 394cell line
  • 256primary cell
  • 111in vitro differentiated cells
  • 2stem cell
Organ
  • 418liver
  • 203brain
  • 150pancreas
  • 144heart
  • 119kidney
  • 115epithelium
  • 87vasculature
  • 84limb
  • 83blood vessel
  • 67connective tissue
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 29artery
  • 26nerve
  • 18ureter
  • 14embryo
  • 13spleen
  • 13vein
  • 9adipose tissue
  • 6eye
  • 1pituitary gland
Project
  • 1451AMP
  • 88T1D
Genome assembly (visualization)
  • 1424GRCh38
  • 1419hg19
Lab
  • 1371AMP-T2D consortium
  • 114Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 14Bing Ren, UCSD
Audit category:
  • 51inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 48missing controlled_by
Audit category:
  • 54inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

1539 results

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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
tissue
liver822
left cardiac atrium401
kidney20131
heart left ventricle293
body of pancreas264
cell line
HepG2307
GM1287854
EndoC_BH113
Panc161
smooth muscle cell of the coronary artery4
primary cell
monocyte84
CD8-positive, alpha-beta T cell30
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic ductal cell13
in vitro differentiated cells
adipocyte421
hepatocyte14
neural progenitor cell13
pancreatic endoderm12
definitive endodermal cell6
stem cell
hESC2
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