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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
3
pCHi-C
Assay category
14
3D chromatin structure
Date released
11
March, 2020
3
October, 2019
2
November, 2019
1
August, 2018
Available data
3006
bam
2744
bigWig
1474
tsv
1353
bed narrowPeak
1127
fastq
997
bigBed narrowPeak
315
bed broadPeak
314
tagAlign
280
bigBed broadPeak
263
bed bed3+
95
txt
36
bed bedMethyl
36
bigBed bedMethyl
17
bedpe bed3+
14
hic
8
csv
5
hdf5
3
tar
2
ibed
1
tagAlign bed3+
Organism
17
Homo sapiens
Biosample type
9
tissue
7
in vitro differentiated cells
1
cell line
Organ
3
heart
3
pancreas
2
blood vessel
2
epithelium
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
liver
vein
Project
17
AMP
Genome assembly (visualization)
16
hg19
Lab
17
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
assay_title!
ATAC-seq
organ_slims!
vein
target.investigated_as!
other context
BIOSAMPLE
ASSAY
17 results
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Hi-C
pCHi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
EndoC_BH1
1
See all biosamples
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