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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
89
total RNA-seq
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
171
DNA binding
89
Transcription
5
DNA accessibility
2
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
1
control
Date released
550
February, 2021
334
November, 2017
298
May, 2021
267
August, 2017
215
May, 2020
210
June, 2019
202
October, 2019
164
July, 2018
97
May, 2019
80
November, 2018
79
July, 2019
72
December, 2017
65
April, 2019
58
September, 2018
49
April, 2018
47
October, 2018
45
August, 2021
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
16
March, 2020
6
October, 2017
5
December, 2019
5
January, 2018
5
November, 2020
3
August, 2018
3
June, 2018
Available data
282
fastq
277
bam
267
bigWig
137
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
37
bigBed narrowPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
261
Homo sapiens
Biosample type
176
tissue
48
in vitro differentiated cells
43
primary cell
Organ
156
pancreas
64
connective tissue
17
liver
16
adipose tissue
14
epithelium
13
musculature of body
Project
267
AMP
Genome assembly (visualization)
265
hg19
242
GRCh38
Lab
267
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
files.file_type!
vcf
BIOSAMPLE
ASSAY
267 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
adipocyte
47
1
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
pancreatic beta cell
7
See all biosamples
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