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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1390ChIP-seq
  • 1278total RNA-seq
  • 209DNase-seq
  • ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1402Transcription
  • 1390DNA binding
  • 214DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 869histone modification
  • 868histone
  • 496transcription factor
  • 440narrow histone mark
  • 427broad histone mark
  • 106RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • 550February, 2021
  • 334November, 2017
  • 298May, 2021
  • 267August, 2017
  • 215May, 2020
  • 210June, 2019
  • 202October, 2019
  • 164July, 2018
  • 97May, 2019
  • 80November, 2018
  • 79July, 2019
  • 72December, 2017
  • 65April, 2019
  • 58September, 2018
  • 49April, 2018
  • 47October, 2018
  • 45August, 2021
  • 40May, 2024
  • 31February, 2018
  • 31November, 2019
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 6October, 2017
  • 5December, 2019
  • 5January, 2018
  • 5November, 2020
  • 3August, 2018
  • 3June, 2018
Available data
  • 3217bam
  • 3033bigWig
  • 1586tsv
  • 1539bed narrowPeak
  • 1297fastq
  • 1015bigBed narrowPeak
  • 398tagAlign
  • 320bed broadPeak
  • 285bigBed broadPeak
  • 269bed bed3+
  • 158txt
  • 114zippedFastqFolder
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 8csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3027Homo sapiens
Biosample type
  • 1729tissue
  • 535primary cell
  • 519cell line
  • 247in vitro differentiated cells
  • 3stem cell
Organ
  • 601liver
  • 582pancreas
  • 561connective tissue
  • 421adipose tissue
  • 267epithelium
  • 220brain
  • 220heart
  • 152vasculature
  • 147blood vessel
  • 131kidney
  • 89limb
  • 83artery
  • 67musculature of body
  • 58bone element
  • 54blood
  • 54bodily fluid
  • 30nerve
  • 29embryo
  • 18ureter
  • 15spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2847AMP
  • 186T1D
Genome assembly (visualization)
  • 2892hg19
  • 2879GRCh38
  • 5hg18
Lab
  • 2764AMP-T2D consortium
  • 215Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 14Bing Ren, UCSD
Audit category:
  • 185inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

3033 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue13812
islet of Langerhans29260161
liver8214721
bone tissue58
left cardiac atrium401
primary cell
monocyte8453
CD8-positive, alpha-beta T cell334
pancreatic alpha cell71012
pancreatic beta cell71012
pancreatic ductal cell13410
cell line
HepG232651
smooth muscle cell of the coronary artery452
GM1287854
EndoC_BH11333
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte4741
neural progenitor cell137
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm1241
stem cell
hESC21
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