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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
8
single cell RNA-seq
ATAC-seq
3
ChIP-seq
1
FAIRE-seq
1
MPRA
1
snATAC-seq
Assay category
18
Transcription
3
DNA binding
2
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
90
February, 2021
August, 2021
7
May, 2022
4
February, 2023
3
November, 2017
1
November, 2018
1
October, 2019
1
October, 2022
1
September, 2018
Available data
3178
bam
2988
bigWig
1509
bed narrowPeak
1463
tsv
1297
fastq
1015
bigBed narrowPeak
374
tagAlign
320
bed broadPeak
285
bigBed broadPeak
264
bed bed3+
114
zippedFastqFolder
101
txt
36
bed bedMethyl
36
bigBed bedMethyl
21
bedpe bed3+
21
hic
8
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
107
Homo sapiens
Biosample type
101
tissue
4
cell line
3
primary cell
Organ
88
bone element
6
pancreas
5
kidney
4
liver
4
skeleton
1
blood vessel
1
epithelium
1
musculature of body
1
vasculature
1
vein
Project
108
AMP
Genome assembly (visualization)
5
hg19
Lab
102
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
assay_title!
ATAC-seq
month_released!
August, 2021
BIOSAMPLE
ASSAY
108 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ChIP-seq
FAIRE-seq
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
+ See 4 more…
cell line
HepG2
3
MIN6
1
primary cell
pancreatic cell
2
endothelial cell of umbilical vein
1
See all biosamples
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