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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
3
WGBS
3
single cell RNA-seq
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
90
DNA binding
3
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
39
transcription factor
26
histone
26
histone modification
25
control
13
narrow histone mark
12
broad histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
71
August, 2017
23
October, 2018
2
July, 2018
1
April, 2018
1
August, 2018
1
November, 2018
Available data
732
bam
692
bigWig
502
tsv
186
bed narrowPeak
128
bigBed narrowPeak
101
bed bed3+
99
fastq
88
bed broadPeak
87
bigBed broadPeak
62
txt
22
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
5
csv
1
bedpe bed3+
1
hdf5
1
hic
Organism
99
Homo sapiens
Biosample type
55
in vitro differentiated cells
41
tissue
3
primary cell
Organ
464
liver
415
pancreas
225
epithelium
99
connective tissue
60
blood
60
bodily fluid
42
adipose tissue
27
embryo
23
spleen
20
brain
6
vasculature
3
blood vessel
2
musculature of body
0
kidney
Project
99
AMP
Genome assembly (visualization)
73
GRCh38
71
hg19
Lab
99
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
99 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
53
1
white fat cell
1
tissue
omental fat pad
11
1
subcutaneous adipose tissue
12
white adipose tissue
12
adipose tissue
2
3
primary cell
pancreatic stellate cell
3
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