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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 857ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 857DNA binding
  • 371Transcription
  • 41DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 282August, 2017
  • 94December, 2017
  • 88November, 2018
  • 76February, 2023
  • 60October, 2018
  • 59September, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 39February, 2018
  • 38September, 2020
  • 35December, 2018
  • 30January, 2019
  • 9October, 2017
  • 6May, 2022
  • 6September, 2017
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
Available data
  • 3217bam
  • 3033bigWig
  • 1586tsv
  • 1539bed narrowPeak
  • 1297fastq
  • 1015bigBed narrowPeak
  • 398tagAlign
  • 320bed broadPeak
  • 285bigBed broadPeak
  • 269bed bed3+
  • 158txt
  • 114zippedFastqFolder
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 8csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1290Homo sapiens
Biosample type
  • 427cell line
  • 377primary cell
  • 348tissue
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • 464liver
  • 415pancreas
  • 225epithelium
  • 99connective tissue
  • 60blood
  • 60bodily fluid
  • 42adipose tissue
  • 27embryo
  • 23spleen
  • 20brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1138AMP
  • 159HPAP
Genome assembly (visualization)
  • 959hg19
  • 909GRCh38
  • 5hg18
Lab
  • 1132AMP-T2D consortium
  • 159Klaus Kaestner, Upenn
  • 6Kyle Gaulton, UCSD
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

1297 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2360511
GM1287860
primary cell
pancreatic alpha cell1352126
Langerhans cell3427
pancreatic beta cell132112
exocrine cell39
pancreatic ductal cell1349
tissue
islet of Langerhans2897611
liver67121
body of pancreas3322
spleen2021
pancreas1621
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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