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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 376ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • ATAC-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 376DNA binding
  • 163Transcription
  • 4DNA accessibility
  • 13D chromatin structure
Target of assay
  • 229transcription factor
  • 82recombinant protein
  • 76control
  • 69histone
  • 69histone modification
  • 38broad histone mark
  • 31narrow histone mark
  • 26RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 173November, 2017
  • 150August, 2017
  • 58September, 2018
  • 50November, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 12January, 2019
  • 4December, 2018
  • 4October, 2017
  • 1August, 2018
  • 1June, 2018
Available data
  • 544fastq
  • 543bam
  • 464bigWig
  • 266bed narrowPeak
  • 230bigBed narrowPeak
  • 163tsv
  • 16bed broadPeak
  • 14bed bed3+
  • 11tagAlign
  • 10bigBed broadPeak
Organism
  • 538Homo sapiens
Biosample type
  • 227cell line
  • 199tissue
  • 101primary cell
  • 17in vitro differentiated cells
Organ
  • 262liver
  • 201pancreas
  • 64epithelium
  • 32connective tissue
  • 27adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 5brain
  • 4embryo
Project
  • 544AMP
Genome assembly (visualization)
  • 462hg19
  • 459GRCh38
Lab
  • 544AMP-T2D consortium
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 63missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

544 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
Hi-C
cell line
HepG220551
GM1287816
tissue
islet of Langerhans689
liver501
pancreas13
white adipose tissue12
subcutaneous adipose tissue9
primary cell
pancreatic endocrine cell23
pancreatic ductal cell1342
pancreatic acinar cell844
pancreatic beta cell102
pancreatic alpha cell101
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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