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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
59
total RNA-seq
16
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
67
Transcription
16
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
170
May, 2021
121
May, 2022
100
August, 2021
88
February, 2023
56
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
25
May, 2024
19
April, 2020
16
January, 2021
10
November, 2020
5
March, 2023
3
May, 2023
3
October, 2022
1
March, 2019
Available data
57
txt
12
bed narrowPeak
12
bigWig
10
tsv
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
100
Homo sapiens
Biosample type
66
tissue
32
cell line
2
in vitro differentiated cells
Organ
66
kidney
29
liver
2
connective tissue
2
pancreas
Project
100
AMP
Genome assembly (visualization)
16
hg19
Lab
AMP-T2D consortium
64
Katalin Susztak, Upenn
34
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
lab.title!
AMP-T2D consortium
target.investigated_as!
narrow histone mark
other context
BIOSAMPLE
ASSAY
100 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
49
8
6
1
islet of Langerhans
1
1
cell line
HepG2
9
16
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
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