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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
ATAC-seq
64
total RNA-seq
25
ChIP-seq
6
snATAC-seq
4
Capture-C
1
Hi-C
1
RNA microarray
Assay category
170
Transcription
25
DNA binding
6
DNA accessibility
1
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
693
February, 2021
406
August, 2017
406
November, 2017
364
May, 2021
292
October, 2019
241
May, 2020
218
June, 2019
207
August, 2021
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
59
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
Available data
113
tsv
57
txt
39
bam
31
bigWig
24
tagAlign
16
bed narrowPeak
5
bed bed3+
1
hic
Organism
206
Homo sapiens
Biosample type
163
tissue
30
in vitro differentiated cells
10
cell line
4
primary cell
Organ
92
heart
64
kidney
8
embryo
6
blood vessel
6
epithelium
6
vasculature
4
liver
3
connective tissue
2
artery
2
pancreas
1
adipose tissue
Project
207
AMP
Genome assembly (visualization)
33
hg19
31
GRCh38
Lab
141
AMP-T2D consortium
64
Katalin Susztak, Upenn
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assay_title!
ATAC-seq
lab.title!
Bing Ren, UCSD
Stephen Parker, UMich
organ_slims!
thymus
BIOSAMPLE
ASSAY
207 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 10 more…
in vitro differentiated cells
neural progenitor cell
7
21
adipocyte
1
osteoblast
1
cell line
H1-hESC
8
EndoC_BH1
2
primary cell
hepatocyte
4
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