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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
2
WGBS
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
20
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
9
November, 2018
7
December, 2018
7
January, 2019
1
March, 2020
Available data
23
bam
23
fastq
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
24
Homo sapiens
Biosample type
24
tissue
Organ
793
pancreas
767
liver
657
connective tissue
483
adipose tissue
421
epithelium
343
heart
270
brain
212
kidney
187
vasculature
181
blood vessel
147
bone element
111
limb
94
artery
93
musculature of body
68
blood
bodily fluid
41
nerve
37
embryo
32
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
24
AMP
Genome assembly (visualization)
15
GRCh38
13
hg19
Lab
24
AMP-T2D consortium
assay_title!
ATAC-seq
lab.title!
Katalin Susztak, Upenn
month_released!
February, 2020
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
WGBS
DNase-seq
pCHi-C
tissue
spleen
20
2
1
1
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