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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
55
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
52
transcription factor
19
RNA binding protein
16
recombinant protein
5
chromatin remodeller
3
control
3
other context
3
other post-translational modification
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
241
May, 2020
218
June, 2019
179
August, 2021
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
November, 2019
February, 2020
19
April, 2020
15
November, 2020
15
October, 2017
12
January, 2019
10
December, 2019
8
December, 2018
8
January, 2021
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
1
May, 2023
Available data
73
fastq
72
bam
68
bigWig
61
bed narrowPeak
61
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
73
Homo sapiens
Biosample type
46
cell line
26
tissue
1
primary cell
Organ
53
liver
15
blood
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
73
AMP
Genome assembly (visualization)
67
GRCh38
59
hg19
Lab
73
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
ATAC-seq
lab.title!
Katalin Susztak, Upenn
month_released!
February, 2020
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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