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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
ATAC-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
20
total RNA-seq
Assay category
80
DNA binding
54
Transcription
41
DNA methylation
22
DNA accessibility
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
693
February, 2021
406
August, 2017
406
November, 2017
292
October, 2019
243
August, 2021
218
June, 2019
196
May, 2020
168
July, 2018
135
May, 2021
120
May, 2019
117
May, 2022
102
July, 2019
94
December, 2017
90
February, 2023
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
March, 2019
Available data
95
zippedFastqFolder
79
bam
65
bed narrowPeak
65
bigWig
64
bigBed narrowPeak
1
bed bed3+
1
txt
Organism
197
Homo sapiens
Biosample type
102
tissue
95
primary cell
Organ
57
heart
41
epithelium
41
pancreas
23
kidney
20
liver
2
musculature of body
Project
102
AMP
95
HPAP
Genome assembly (visualization)
66
hg19
64
GRCh38
Lab
95
Klaus Kaestner, Upenn
82
AMP-T2D consortium
20
Karen Mohlke, UNC
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assay_title!
ATAC-seq
lab.title!
Kyle Gaulton, UCSD
month_released!
March, 2019
BIOSAMPLE
ASSAY
197 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
snATAC-seq
total RNA-seq
tissue
heart left ventricle
35
kidney
23
liver
20
heart right ventricle
13
heart
9
+ See 1 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
pancreatic beta cell
16
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