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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
296
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
296
DNA binding
89
Transcription
15
DNA methylation
6
DNA accessibility
Target of assay
199
histone modification
198
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
693
February, 2021
406
August, 2017
406
November, 2017
292
October, 2019
243
August, 2021
218
June, 2019
196
May, 2020
168
July, 2018
135
May, 2021
120
May, 2019
117
May, 2022
102
July, 2019
94
December, 2017
90
February, 2023
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
282
fastq
277
bam
267
bigWig
137
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
37
bigBed narrowPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
399
Homo sapiens
Biosample type
282
tissue
68
in vitro differentiated cells
56
primary cell
Organ
185
pancreas
124
connective tissue
56
adipose tissue
53
liver
26
epithelium
26
musculature of body
Project
406
AMP
Genome assembly (visualization)
271
hg19
244
GRCh38
Lab
406
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
lab.title!
Kyle Gaulton, UCSD
month_released!
November, 2020
BIOSAMPLE
ASSAY
406 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 3 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
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