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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
151
ChIP-seq
40
single cell RNA-seq
16
total RNA-seq
ATAC-seq
Assay category
187
DNA accessibility
151
DNA binding
56
Transcription
Target of assay
111
histone
111
histone modification
66
broad histone mark
45
narrow histone mark
31
control
9
RNA binding protein
9
transcription factor
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
338
bam
307
bed narrowPeak
307
bigBed narrowPeak
307
bigWig
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
38
fastq
19
zippedFastqFolder
Organism
394
Homo sapiens
Biosample type
278
tissue
116
primary cell
Organ
86
kidney
58
brain
57
vasculature
56
heart
55
blood vessel
50
musculature of body
41
epithelium
39
limb
22
pancreas
18
connective tissue
18
ureter
7
artery
7
eye
2
liver
1
adipose tissue
Project
338
AMP
56
HPAP
Genome assembly (visualization)
306
GRCh38
284
hg19
Lab
338
AMP-T2D consortium
56
Klaus Kaestner, Upenn
Audit category:
29
inconsistent ontology term
assay_title!
ATAC-seq
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
394 results
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Clear Filters
DNase-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
tissue
muscle of leg
13
7
heart
18
ascending aorta
1
16
muscle of arm
17
thoracic aorta
16
+ See 40 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
+ See 20 more…
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