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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
5
total RNA-seq
3
DNase-seq
ATAC-seq
2
WGBS
1
pCHi-C
Assay category
55
DNA binding
5
Transcription
3
DNA accessibility
2
DNA methylation
Target of assay
30
histone
30
histone modification
20
broad histone mark
19
control
10
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
41
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
1
February, 2020
1
March, 2020
Available data
64
bam
45
bigWig
39
bed narrowPeak
39
bigBed narrowPeak
23
fastq
6
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
66
Homo sapiens
Biosample type
66
tissue
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
289
heart
282
brain
256
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
45
GRCh38
43
hg19
Lab
66
AMP-T2D consortium
assay_title!
ATAC-seq
lab.title!
Stephen Parker, UMich
month_released!
April, 2019
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
pCHi-C
tissue
tibial nerve
35
5
2
spleen
20
1
2
1
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