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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
415
ChIP-seq
ATAC-seq
Assay category
415
DNA binding
Target of assay
242
transcription factor
98
histone
98
histone modification
72
control
66
recombinant protein
60
broad histone mark
38
narrow histone mark
35
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
635
February, 2021
406
August, 2017
400
November, 2017
365
May, 2021
246
October, 2019
241
May, 2020
237
August, 2021
211
June, 2019
168
July, 2018
123
May, 2022
102
February, 2023
94
December, 2017
92
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
70
May, 2019
59
September, 2018
56
March, 2020
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
22
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
394
bam
334
bigWig
327
fastq
315
bed narrowPeak
314
bigBed narrowPeak
92
tagAlign
69
bed broadPeak
60
bigBed broadPeak
3
tar
Organism
415
Homo sapiens
Biosample type
315
cell line
97
tissue
3
primary cell
Organ
315
liver
106
brain
6
epithelium
vasculature
3
blood vessel
Project
415
AMP
Genome assembly (visualization)
282
GRCh38
281
hg19
Lab
415
AMP-T2D consortium
Audit category:
14
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_title!
ATAC-seq
lab.title!
Stephen Parker, UMich
organ_slims!
vasculature
BIOSAMPLE
ASSAY
415 results
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Clear Filters
ChIP-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
brain
15
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
primary cell
astrocyte of the cerebellum
3
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